PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 890969
Common NameARALYDRAFT_890969
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family LBD
Protein Properties Length: 194aa    MW: 21549.4 Da    PI: 5.087
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
890969genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.21.7e-3051041100
  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
             +Ca+Ck+l+++Ca++C+ ap+fp+++  +f+ v ++FGa nv k+l +l  +e+r++a+++l yeAear rdP++G++g+il+ ++ l++ ++e++++k+e
  890969   5 RCAVCKILNETCAQGCISAPHFPSND-TSFEDVSRVFGAMNVRKILVDLnTPEQRQIAANCLRYEAEARRRDPISGCHGMILHHKSILNNIEQEIESTKNE 104
             6**********************998.79*******************967888******************************************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.4144105IPR004883Lateral organ boundaries, LOB
PfamPF031955.4E-295102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MASNRCAVCK ILNETCAQGC ISAPHFPSND TSFEDVSRVF GAMNVRKILV DLNTPEQRQI  60
AANCLRYEAE ARRRDPISGC HGMILHHKSI LNNIEQEIES TKNELEPYVG SDRMPKFFDL  120
PMPEDFLTTS ASLDFFVEKI KSLNAVQKNQ LMQLPTADAQ MIMGKIFWNG EDHKKDEDGH  180
GPEADGASTS ACQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891065.11e-145hypothetical protein ARALYDRAFT_890969
SwissprotO496515e-90LBD32_ARATH; LOB domain-containing protein 32
TrEMBLD7KJB01e-145D7KJB0_ARALL; Putative uncharacterized protein
STRINGscaffold_103763.11e-145(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22700.13e-91LOB domain-containing protein 32